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Computational methods for multi-scale structural optimisation

Structural optimisation is a powerful computational methodology for finding high-performing designs for structural components or material architectures. For example, what periodic scaffold would provide the highest possible stiffness for its weight?Solving such a problem computationally requires an understanding of the relevant equations required to model the physical properties of interest, as well as efficient implementation of a range of numerical methods including finite elements, finite differences and optimisation.With recent developments in 3D printing technologies it is now becoming possible to …

Study level
PhD, Master of Philosophy, Honours, Vacation research experience scheme
Faculty
Faculty of Science
School
School of Mathematical Sciences

Computational drug repurposing for neuropsychiatric disease

While hundreds of robust genetic associations have been found for neuropsychiatric disease (such as schizophrenia, major depression, and anxiety) understanding the exact molecular mechanisms leading to disease onset and progression remains challenging. Inherited (i.e. genetic) risk factors for many neuropsychiatric diseases converge on genes that are co-ordinately expressed (co-expressed) in a disease-relevant tissue (e.g. brain). The study of how genetic risk factors affect co-expressed genes (i.e. gene co-expression analysis) has the potential to uncover new biological processes underlying disease onset. …

Study level
Honours
Faculty
Faculty of Health
School
School of Biomedical Sciences

High-performance bioinformatic analysis of gene editing targets using Python Standard Libraries

The CRISPR-Cas9 technology allows the modification of virtually any gene in any organism of interest. It has generated a lot of interest, both in the research community and the general population.One of the crucial components of CRISPR experiments is the design of the 'guide RNAs' that will control where modifications occur. It is vital that the modification is made efficiently and at the desired location. This calls for bioinformatic approaches to design these guide RNAs.Our existing Python-based bioinformatic pipeline is …

Study level
Vacation research experience scheme
Faculty
Faculty of Science
School
School of Computer Science
Research centre(s)
Centre for Data Science

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