Dr Paul Muhindira

Profile image of Dr Paul Muhindira

Faculty of Science,
School of Biology & Environmental Science


Contact

+61 7 3138 2153

View location details(QUT staff and student access only)

Personal details

Positions

Research Fellow
Faculty of Science,
School of Biology & Environmental Science

Keywords

Bioinformatics, Phylogenetics, Machine Learning, Structural Bioinformatics, Genome/Transcriptome assembly and annotation, Metabolomics

Discipline

Plant Biology, Agricultural Biotechnology

Field of Research code, Australian and New Zealand Standard Research Classification (ANZSRC), 2008

Qualifications

  • Doctor of Philosophy (University of Queensland)

Publications

  • Appels R, Eversole K, Stein N, Feuillet C, Keller B, Rogers J, Pozniak C, Choulet F, Distelfeld A, Poland J, Ronen G, Sharpe A, Barad O, Baruch K, Keeble-gagnère G, Mascher M, Ben-zvi G, Josselin A, Himmelbach A, Balfourier F, Gutierrez-gonzalez J, Hayden M, Koh C, Muehlbauer G, Pasam R, Paux E, Rigault P, Tibbits J, Tiwari V, Spannagl M, Lang D, Gundlach H, Haberer G, Mayer K, Ormanbekova D, Prade V, Šimková H, Wicker T, Swarbreck D, Rimbert H, Felder M, Guilhot N, Kaithakottil G, Keilwagen J, Leroy P, Lux T, Twardziok S, Venturini L, Juhász A, Abrouk M, Fischer I, Uauy C, Borrill P, Ramirez-gonzalez R, Arnaud D, Chalabi S, Chalhoub B, Cory A, Datla R, Davey M, Jacobs J, Robinson S, Steuernagel B, Van Ex F, Wulff B, Benhamed M, Bendahmane A, Concia L, Latrasse D, Bartoš J, Bellec A, Berges H, Doležel J, Frenkel Z, Gill B, Korol A, Letellier T, Olsen O, Singh K, Valárik M, Van Der Vossen E, Vautrin S, Weining S, Fahima T, Glikson V, Raats D, Cíhalíková J, Toegelová H, Vrána J, Sourdille P, Darrier B, Barabaschi D, Cattivelli L, Hernandez P, Galvez S, Budak H, Jones J, Witek K, Yu G, Small I, Melonek J, Zhou R, Belova T, Kanyuka K, King R, Nilsen K, Walkowiak S, Cuthbert R, Knox R, Wiebe K, Xiang D, Rohde A, Golds T, Cížková J, Akpinar B, Biyiklioglu S, Gao L, N’daiye A, Kubaláková M, Šafár J, Alfama F, Adam-blondon A, Flores R, Guerche C, Loaec M, Quesneville H, Condie J, Ens J, Maclachlan R, Tan Y, Alberti A, Aury J, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P, Kaur G, Luo M, Sehgal S, Chhuneja P, Gupta O, Jindal S, Kaur P, Malik P, Sharma P, Yadav B, Singh N, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar R, Holušová K, Plíhal O, Clark M, Heavens D, Kettleborough G, Wright J, Balcárková B, Hu Y, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J, Cattonaro F, Jiumeng M, Kugler K, Pfeifer M, Sandve S, Xun X, Zhan B, Batley J, Bayer P, Edwards D, Hayashi S, Tulpová Z, Visendi P, Cui L, Du X, Feng K, Nie X, Tong W, Wang L, (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome, Science, 361 (6403) p
  • Chan C, Rosic N, Lorenc M, Visendi P, Lin M, Kaniewska P, Ferguson B, Gresshoff P, Batley J, Edwards D, (2019) A differential k-mer analysis pipeline for comparing RNA-Seq transcriptome and meta-transcriptome datasets without a reference, Functional and Integrative Genomics, 19 (2) p363
  • Visendi P, Ng'ang'a W, Bulimo W, Bishop R, Ochanda J, De Villiers E, (2011) TparvaDB: A database to support Theileria parva vaccine development, Database, 2011 () p1
  • Visendi P, Berkman P, Hayashi S, Golicz A, Bayer P, Ruperao P, Hurgobin B, Montenegro J, Chan C, Stankova H, Batley J, Simkova H, Dolezel J, Edwards D, (2016) An efficient approach to BAC based assembly of complex genomes, Plant Methods, 12 (1) p1
  • Visendi P, Batley J, Edwards D, (2014) Next generation sequencing and germplasm resources. In R Tuberosa, A Graner & E Frison, Genomics of Plant Genetic Resources: Volume 1. Managing, Sequencing and Mining Genetic Resources, Springer p369
  • Berkman P, Visendi P, Lee H, Stiller J, Manoli S, Lorenc M, Lai K, Batley J, Fleury D, Simkova H, Kubalakova M, Weining S, Dolezel J, Edwards D, (2013) Dispersion and domestication shaped the genome of bread wheat, Plant Biotechnology Journal, 11 (5) p564
  • Visendi P, Batley J, Edwards D, (2013) Next generation characterisation of cereal genomes for marker discovery, Biology, 2 (4) p1357
  • Tulpová Z, Luo M, Toegelová H, Visendi P, Hayashi S, Vojta P, Paux E, Kilian A, Abrouk M, Bartoš J, Hajdúch M, Batley J, Edwards D, Doležel J, Šimková H, (2019) Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies, New Biotechnology, 48 () p12

QUT ePrints

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Supervision

Current supervisions